Structure of PDB 7bjk Chain D Binding Site BS01

Receptor Information
>7bjk Chain D (length=212) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLNKQILGT
DLDALSLEEVVLLSYNKGNMLPAFNNAAQAWNHEFFWESIQPGGGGKPTG
ELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKAKKLVIVKTPNA
VNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTRL
ESAIARAVQREQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7bjk Chain D Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7bjk The Plastid-Encoded RNA Polymerase-Associated Protein PAP9 Is a Superoxide Dismutase With Unusual Structural Features.
Resolution2.25 Å
Binding residue
(original residue number in PDB)		H31 H83 D182 H186
Binding residue
(residue number reindexed from 1)		H31 H83 D165 H169
Annotation score1
Enzymatic activity
Enzyme Commision number 1.15.1.1: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0004784 superoxide dismutase activity
GO:0046872 metal ion binding
Biological Process
GO:0006801 superoxide metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7bjk, PDBe:7bjk, PDBj:7bjk
PDBsum7bjk
PubMed34276730
UniProtQ9LU64|SODF2_ARATH Superoxide dismutase [Fe] 2, chloroplastic (Gene Name=FSD2)

[Back to BioLiP]