Structure of PDB 7azd Chain D Binding Site BS01

Receptor Information
>7azd Chain D (length=363) Species: 1444266 (Escherichia coli 2-427-07_S4_C3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHMKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTD
LEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERML
VRSGRSRFSLSTLPAADFPNLDWQSEVEFTLPQATMKRLIEATQFSMAHQ
DVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKG
VIELMRMLNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD
KHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE
EILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAA
SQSAAYVVMPMRL
Ligand information
Receptor-Ligand Complex Structure
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PDB7azd Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp.
Resolution2.19 Å
Binding residue
(original residue number in PDB)		Y153 Y154 D238 G239 R240
Binding residue
(residue number reindexed from 1)		Y154 Y155 D235 G236 R237
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0005515 protein binding
GO:0008408 3'-5' exonuclease activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0006271 DNA strand elongation involved in DNA replication
GO:0006974 DNA damage response
GO:0030174 regulation of DNA-templated DNA replication initiation
GO:0032297 negative regulation of DNA-templated DNA replication initiation
GO:0042276 error-prone translesion synthesis
GO:0044787 bacterial-type DNA replication
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009360 DNA polymerase III complex
GO:0030894 replisome
GO:1990078 replication inhibiting complex
GO:1990085 Hda-beta clamp complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7azd, PDBe:7azd, PDBj:7azd
PDBsum7azd
PubMed34806883
UniProtP0A988|DPO3B_ECOLI Beta sliding clamp (Gene Name=dnaN)

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