Structure of PDB 6yyj Chain D Binding Site BS01

Receptor Information
>6yyj Chain D (length=172) Species: 146786 (Thermosynechococcus vestitus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNAST
IVANAARALFAEQPQLIQPGGNAYTNRRMAACLRDMEIILRYVTYAILAG
DSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKMKDAAIAIANDPNGITP
GDCSALMSEIAGYFDRAAAAVA
Ligand information
Ligand IDPXQ
InChIInChI=1S/C33H42N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13,19-20,34-35H,7-12,14-15H2,1-6H3,(H,36,43)(H,38,39)(H,40,41)/b26-13-/t19-,20-/m1/s1
InChIKeyRIXXCMVADHNPLY-UKJJQICTSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC[CH]1[CH](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(C=C4NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
CACTVS 3.385CC[C@@H]1[C@@H](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(\C=C4/NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
OpenEye OEToolkits 2.0.7CCC1C(C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
OpenEye OEToolkits 2.0.7CC[C@@H]1[C@H](C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
FormulaC33 H42 N4 O6
Name3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid
ChEMBL
DrugBank
ZINC
PDB chain6yyj Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yyj C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Resolution2.16 Å
Binding residue
(original residue number in PDB)
N72 A73 R78 A81 C82 R84 D85 M86 L113 L120 T122 V127
Binding residue
(residue number reindexed from 1)
N72 A73 R78 A81 C82 R84 D85 M86 L113 L120 T122 V127
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome
GO:0031676 plasma membrane-derived thylakoid membrane

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6yyj, PDBe:6yyj, PDBj:6yyj
PDBsum6yyj
PubMed33559611
UniProtP50033|PHCB_THEVB C-phycocyanin beta subunit (Gene Name=cpcB)

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