Structure of PDB 6y5x Chain D Binding Site BS01

Receptor Information
>6y5x Chain D (length=283) Species: 1497391 (New Jersey polyomavirus-2013) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVLNIITDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNL
LSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHL
LEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAI
PAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRN
ENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCAD
ICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6y5x Chain C Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6y5x Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		S237 E240
Binding residue
(residue number reindexed from 1)		S198 E201
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:6y5x, PDBe:6y5x, PDBj:6y5x
PDBsum6y5x
PubMed32723915
UniProtA0A024B5J2

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