Structure of PDB 6vjf Chain D Binding Site BS01

Receptor Information
>6vjf Chain D (length=348) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LAQPGGISDPNLIKLVNKLQDVFTTVGVNNPIDLPQIVVVGSQSSGASSV
LENIVGRDFLPRGQGIVTRRPLVLQLINRQSSDERLADSTDKAANLDEWG
EFLHLPGQKFYDFNKIRDEINRETEAKVGRNAGISPAPINLRIYSPHVLN
LTLVDLPGLTRVPVGDQPRDIERQIRDMILKYIQKPNAIILAVTAANVDL
ANSDGLKLAREVDPEGQRTIGVLTKVDLMDEGTDVVDILAGRIIPLRLGY
VPVVNRGQRDIDNKKPITAALEAEKAFFENHKAYRNKSAYCGTPYLARKL
NLILMMHIKQTLPDIKQRISSSLQKYQQELCQQMVESLQRAAEIVSQV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6vjf Chain D Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vjf Structural and functional characterization of the dominant negative P-loop lysine mutation in the dynamin superfamily protein Vps1.
Resolution2.472 Å
Binding residue
(original residue number in PDB)		S57 T77
Binding residue
(residue number reindexed from 1)		S48 T68
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:6vjf, PDBe:6vjf, PDBj:6vjf
PDBsum6vjf
PubMed31981262
UniProtG0SFF0

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