Structure of PDB 6ve1 Chain D Binding Site BS01

Receptor Information

>6ve1 Chain D (length=267) Species: 1922 (Streptomyces plicatus)

MVKQGPTSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTG
TKTAYLHFNENVQRVLDNAVTQIRPLQQQGIKVLLSVLGNHQGAGFANFP
SQQAASAFAKQLSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLV
TALRANMPDKIISLYNIGPAASRLSYGGVDVSDKFDYAWNPYYGTWQVPG
IALPKAQLSPAAVEIGRTSRSTVADLARRTVDEGYGVYLTYNLDGGDRTA
DVSAFTRELYGSEAVRT

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6ve1 Chain D Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ve1 SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique.
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): N173 N197 P206
• Binding residue (residue number reindexed from 1): N166 N190 P199
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.2.1.96: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.

Gene Ontology

Molecular Function

• GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
• GO:0016798 hydrolase activity, acting on glycosyl bonds
• GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity

Biological Process

• GO:0005975 carbohydrate metabolic process

Cellular Component

• GO:0005576 extracellular region

External links

• PDB: RCSB:6ve1, PDBe:6ve1, PDBj:6ve1
• PDBsum: 6ve1
• PubMed: 33201877
• UniProt: P04067|EBAG_STRPL Endo-beta-N-acetylglucosaminidase H