Structure of PDB 6uc1 Chain D Binding Site BS01

Receptor Information

>6uc1 Chain D (length=776) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061)

CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLKFKQEEIETITGLLGLSHLVPQQQLSRS
LDNLVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCDEQGNPVEKLKLTD
GDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNVSKHRLAPAMT
AKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFPANRHNVLQGS
IECDNEGVLRFYAGNGISQALSPSSLNTDFADNSNWFDDICDGRVTAVVE
LKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMVSGAALKEQDLD
NLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIRELNSELGFAQLLD
NSASAKSLREGIFNQFRNPLFDQDIDVDDPSNEWVSNSRIIPSKDETNIA
AKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQHLQNWAAGDFSVTQ
VEKESANTIEELGLFYSEQFKNSPNSALLCARGALDALYGGGFHPGVELT
WPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDLQGLNSPNMYQDFGH
VIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPWQSAAASCQAVYTPE
DFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEINGMTHSIAQGMSEE
TFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNGLIQMVSQWKNMAMV
MARPVENPGSSGIPNVVYVAYSQADK

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6uc1 Chain D Residue 903

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6uc1 Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
• Resolution: 2.19 Å
• Binding residue (original residue number in PDB): D360 A362 I365 A699 N700
• Binding residue (residue number reindexed from 1): D324 A326 I329 A660 N661
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:6uc1, PDBe:6uc1, PDBj:6uc1
• PDBsum: 6uc1
• PubMed: 31615898
• UniProt: A0A161XU12