Structure of PDB 6ubv Chain D Binding Site BS01
Receptor Information
>6ubv Chain D (length=388) Species:
1309
(Streptococcus mutans) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
QADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSA
QNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDL
DITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSA
TATYTNLQNSYCNGKKISKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVF
ASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHNSIE
MAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAG
SGWDSSDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKD
NTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTA
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
6ubv Chain D Residue 902 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6ubv
The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin
Resolution
2.7 Å
Binding residue
(original residue number in PDB)
S697 N699 E706
Binding residue
(residue number reindexed from 1)
S241 N243 E250
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:6ubv
,
PDBe:6ubv
,
PDBj:6ubv
PDBsum
6ubv
PubMed
UniProt
P11657
|PAC_STRMG Major cell-surface adhesin PAc (Gene Name=pac)
[
Back to BioLiP
]