Structure of PDB 6ubr Chain D Binding Site BS01

Receptor Information
>6ubr Chain D (length=776) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLKFKQEEIETITGLLGLSHLVPQQQLSRS
LDNLVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCDEQGNPVEKLKLTD
GDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNVSKHRLAPAMT
AKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFPANRHNVLQGS
IECDNEGVLRFYAGNGISQALSPSSLNTDFADNSNWFDDICDGRVTAVVE
LKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMVSGAALKEQDLD
NLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIRELNSELGFAQLLD
NSASAKSLREGIFNQFRNPLFDQDIDVDDPGQSSNEWVSNSRIIPSKDET
NIAAKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQHLQNWAAGDFS
VTQVEKESANTIEELGLFYSEQFKNSPNSALLCARGALDALYGGGFHPGV
ELTWPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDLQGLNSPNMYQD
FGHVIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPWQSAAASCQAVY
TPEDFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEINGMTHSIAQGM
SEETFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNGLIQMVSQWKNM
AMVMARPVENPGSSGIPNVVYVAYSQ
Ligand information
Ligand IDGLY
InChIInChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)
InChIKeyDHMQDGOQFOQNFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(=O)O)N
CACTVS 3.341NCC(O)=O
ACDLabs 10.04O=C(O)CN
FormulaC2 H5 N O2
NameGLYCINE
ChEMBLCHEMBL773
DrugBankDB00145
ZINCZINC000004658552
PDB chain6ubr Chain C Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6ubr Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
Resolution1.96 Å
Binding residue
(original residue number in PDB)		H583 S681 X697
Binding residue
(residue number reindexed from 1)		H547 S645 X661
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6ubr, PDBe:6ubr, PDBj:6ubr
PDBsum6ubr
PubMed31615898
UniProtA0A161XU12

[Back to BioLiP]