Structure of PDB 6ubn Chain D Binding Site BS01

Receptor Information

>6ubn Chain D (length=787) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061)

CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLDERKAEKFKQEEIETITGLLGLSHLVPQ
QQLSRSLDNLSDDIVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCDNPV
EKLKLTDGDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNVSKH
RLAPAMTAKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFPANE
RHNVLQGSIECDNEGVLRFYAGNGISQALSPSSLNTDFADNSNWFDDICD
GRVTAVVELKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMVSGA
ALKEQDLDNLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIRELNSE
LGFAQLLDNSASAKSLREGIFNQFRNPLFDQDIDVDDPGQSSNEWVSNSR
IIPSKDETNIAAKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQHLQ
NWAAGDFSVTQVEKESANTIEELGLFYSEQFKNSPNSALLCARGALDALY
GGGFHPGVELTWPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDLQGL
NSPNMYQDFGHVIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPWQSE
AASCQAVYTPEDFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEINGM
THSIAQGMSEETFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNGLIQ
MVSQWKNMAMVMARPVENPGSSGIPNVVYVAYSQADK

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6ubn Chain D Residue 901

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ubn Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
• Resolution: 2.15 Å
• Binding residue (original residue number in PDB): D360 A362 I365 A699 N700
• Binding residue (residue number reindexed from 1): D332 A334 I337 A671 N672
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:6ubn, PDBe:6ubn, PDBj:6ubn
• PDBsum: 6ubn
• PubMed: 31615898
• UniProt: A0A161XU12