Structure of PDB 6nmz Chain D Binding Site BS01

Receptor Information
>6nmz Chain D (length=227) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HGGTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDD
DLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADL
DRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNH
TKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPA
GAASLDAGDFAAMSAAAFDRNWVAGLV
Ligand information
Ligand IDKSJ
InChIInChI=1S/C14H16O4/c15-12-7-2-1-5-11(12)14(18)10-6-3-4-9(10)8-13(16)17/h1-2,5,7,9-10,15H,3-4,6,8H2,(H,16,17)/t9-,10+/m0/s1
InChIKeyLULBZYDRYZGRST-VHSXEESVSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)C[C@@H]1CCC[C@H]1C(=O)c2ccccc2O
ACDLabs 12.01C1(CCCC1CC(O)=O)C(c2ccccc2O)=O
OpenEye OEToolkits 2.0.6c1ccc(c(c1)C(=O)[C@@H]2CCC[C@H]2CC(=O)O)O
CACTVS 3.385OC(=O)C[CH]1CCC[CH]1C(=O)c2ccccc2O
OpenEye OEToolkits 2.0.6c1ccc(c(c1)C(=O)C2CCCC2CC(=O)O)O
FormulaC14 H16 O4
Name[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic acid
ChEMBL
DrugBank
ZINC
PDB chain6nmz Chain D Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6nmz Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with an intentionally produced fragment degradation product B9D
Resolution2.4 Å
Binding residue
(original residue number in PDB)		T11 K15 A73 P74 A110
Binding residue
(residue number reindexed from 1)		T13 K17 A75 P76 A112
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) T11 G12 K15 T16 K37 T41 G54 E108
Catalytic site (residue number reindexed from 1) T13 G14 K17 T18 K39 T43 G56 E110
Enzyme Commision number 6.3.3.3: dethiobiotin synthase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004141 dethiobiotin synthase activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0009102 biotin biosynthetic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6nmz, PDBe:6nmz, PDBj:6nmz
PDBsum6nmz
PubMed
UniProtP9WPQ5|BIOD_MYCTU Dethiobiotin synthetase BioD (Gene Name=bioD)

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