Structure of PDB 6lz3 Chain D Binding Site BS01

Receptor Information
>6lz3 Chain D (length=486) Species: 4577 (Zea mays) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRIVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSR
WWISQSLNHLDASLRRLGAGKLVTRRSADAAVALLQLVRDTGATHVYFNH
LYDPISLVRDRRLKEMLAAEGIVVQSFNSDLLYEPWEVVDDEGQPFTMFD
PFWNRCLSMPYDPPAPLLPPKRINSGDLSMCPSEDLIFEDESERGSNALL
ARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSLLSPHLHFGEL
SVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS
SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHD
RIRVVVASFFVKVLQLPARWGMKYFWDTLLDADLESDALGWQYITGSLPD
GRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVL
QAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQLE
Ligand information
Ligand IDFAD
InChIInChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1
InChIKeyVWWQXMAJTJZDQX-UYBVJOGSSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)c2cc1C
OpenEye OEToolkits 1.5.0Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O
OpenEye OEToolkits 1.5.0Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
CACTVS 3.341Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)c2cc1C
ACDLabs 10.04O=C2C3=Nc1cc(c(cc1N(C3=NC(=O)N2)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)C
FormulaC27 H33 N9 O15 P2
NameFLAVIN-ADENINE DINUCLEOTIDE
ChEMBLCHEMBL1232653
DrugBankDB03147
ZINCZINC000008215434
PDB chain6lz3 Chain D Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lz3 The oligomeric structures of plant cryptochromes.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		Y226 T238 S239 S242 S284 W347 D350 R353 D381 A382 D383 S386 D387
Binding residue
(residue number reindexed from 1)		Y226 T238 S239 S242 S284 W347 D350 R353 D381 A382 D383 S386 D387
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) S284 L287 W315 D350 A368 W391
Catalytic site (residue number reindexed from 1) S284 L287 W315 D350 A368 W391
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003904 deoxyribodipyrimidine photo-lyase activity
GO:0009882 blue light photoreceptor activity
GO:0071949 FAD binding
GO:0097159 organic cyclic compound binding
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006950 response to stress
GO:0009785 blue light signaling pathway
GO:0032922 circadian regulation of gene expression
GO:0043153 entrainment of circadian clock by photoperiod
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lz3, PDBe:6lz3, PDBj:6lz3
PDBsum6lz3
PubMed32398825
UniProtB8A2L5

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