Structure of PDB 6ksy Chain D Binding Site BS01

Receptor Information

>6ksy Chain D (length=286) Species: 264203 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

INKPLRLIFPQWQGGDNPPYYLGSQLLAWLSPDPKGAVEEVPVPKPTGEP
LQEENGIVGRSILIDQLSEARQLIEKHTPDSLVVLGGDCLVSLAPFSWLL
EKYKDKLGILWIDSHPDVQTPKEYKNAHAHVLGELMGNGDSDFTRTVKHP
VSPQKIMIAGIHDPLPYEANFISEHKIQTCSPEQVRSGAQPVLDWIKNEK
IEYLAIHIDLDVLDPHNFRSVLFAKPGRGQHDFGDVAEGKLNIPDVVKLA
NQAASISKAVGLTIAEHLPWDALNLKNMLEELPLIG

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6ksy Chain D Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6ksy Characterization of a Dimeric Arginase FromZymomonas mobilisZM4.
Resolution	1.649 Å
Binding residue (original residue number in PDB)	C92 D116 D120 D212
Binding residue (residue number reindexed from 1)	C89 D113 D117 D209
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004053	arginase activity
GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0030145	manganese ion binding
GO:0046872	metal ion binding

	Biological Process
GO:0019547	arginine catabolic process to ornithine

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6ksy, PDBe:6ksy, PDBj:6ksy
PDBsum	6ksy
PubMed	32038508
UniProt	Q5NQE9

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