Structure of PDB 6j9f Chain D Binding Site BS01

Receptor Information
>6j9f Chain D (length=1215) Species: 360094 (Xanthomonas oryzae pv. oryzae PXO99A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFK
PERDGLFCAAIFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRE
RMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTRRQ
LLTEEQYLTARQEYNDDFDAAMGAEAVYELLRTIDLQSEMTRLREEIAST
GSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPVLPPDLRPLVPLDGG
RFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQESVDALLD
NGRRGRAIKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDIL
EEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFD
GDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY
MSRALENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDKRTS
GTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKNISRLINSSYRLLGLK
DTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAEVLEIQ
EQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETID
QKSMNSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFRE
GLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCG
TTEGLIMTPIVEGGDVVEPLKERVLGRVVAEDVVTRNTLLDEAWVAKLED
ASVQSVKVRSTISCESSFGVCARCYGRDLARGHQVNIGEAVGVIAAQSIG
EPGTQLTDNITVKTTGSVKFNNLKSVAHASGSLVAVSRSGELSVLDGHGR
ERERYKLPYGATITAKDGDAVKAGQSVANWDPGLPRVADLFEARKPKDPA
ILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVT
KGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEV
ITRQMLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPV
LLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGR
LIPAGTGLAYHAGRR
Ligand information
Receptor-Ligand Complex Structure
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PDB6j9f Structural basis for transcription antitermination at bacterial intrinsic terminator.
Resolution3.95 Å
Binding residue
(original residue number in PDB)		Y46 F260 T262 K332 K334 R339 T791 Y796
Binding residue
(residue number reindexed from 1)		Y46 F252 T254 K320 K322 R327 T775 Y780
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6j9f, PDBe:6j9f, PDBj:6j9f
PDBsum6j9f
PubMed31296855
UniProtB2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' (Gene Name=rpoC)

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