Structure of PDB 6def Chain D Binding Site BS01

Receptor Information
>6def Chain D (length=336) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TLAQPGGISDPNLIKLVNKLQDVFTTVGVNNPIDLPQIVVVGSQSSGKSS
VLENIVGRDFLPRGQGIVTRRPLVLQLINRQSSERLADSTDKAANLDEWG
EFLHLPGQKFYDFNKIRDEINRETEAKVGRNAGISPAPINLRIYSPHVLN
LTLVDLPGLTRVPVGDQPRDIERQIRDMILKYIQKPNAIILAVTAANVDL
ANSDGLKLAREVDPEGQRTIGVLTKVDLMDEGTDVVDILAGRIIPLRLGY
VPVVNRGQRDIDNKKPITAALEAEKAFFENHKAYRNKSAYCGTPYLARKL
NLILMMHIKQTLPDIKQRISSSLMVESLQRAAEIVS
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6def Chain D Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6def Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture.
Resolution2.26 Å
Binding residue
(original residue number in PDB)		S57 T77
Binding residue
(residue number reindexed from 1)		S49 T69
Annotation score1
Enzymatic activity
Enzyme Commision number 3.-.-.-
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:6def, PDBe:6def, PDBj:6def
PDBsum6def
PubMed30087125
UniProtG0SFF0

[Back to BioLiP]