Structure of PDB 6c4h Chain D Binding Site BS01

Receptor Information
>6c4h Chain D (length=47) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ
Ligand information
>6c4h Chain A (length=636) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gaaccgacuaauguugaaaaauuagcggaugacuuguggcugggggugaa
aggccaaucaacuauuuagcacacggcgggugcuaacguccgucgaagau
gaaggaacuaggcaaaauggugauaccagcuggcugcaacuguuuauuaa
aaacacagcacugugcaaacacgaaaguggacguauacggugugacgccu
gcccggugccggcgguaaacggccuaagguagcgaaauuccuugucgggu
aaguuccgaccugcacgaauggcguaaugauggccaggcugucuccaccc
gagacucagugaaauugaacucgcugugaagaugcaguguacccgcggca
agacggaaagaccccgugaaccuuuacuauagcuugacugucuggugggu
aguuugacuggggcggucuccuccuaaagaguaacggaggaacggauaaa
agguacuccggggauaacaggcugauaccgcccaagaguucauaucgacg
gcgguguuuggcaccucgaugucggcucaucacauccuggggcugaagua
ggucccaaggguauggcuguucgccauuuaaagugguacgcgagcugggu
uuagaacgucgugagacaguucggucccuaucugcc
...<<<.<<<<<........>>>>>>>>................<<<...
..>>>....................<<<<<<......>>>>>>.......
..<<.........................<<<<<<<<<..<<<.......
..>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.
<<<..<<<<<<.>>>>..>>>>>........<...........<<<<<<.
....>>>>>>.....>....>>>>>..>>.>>>>>>>.....>>......
.....................<<<<<........>>>>>.......<<<.
<<<.<<......<<<<.<<<<<<..<<<<<.<<<.<<<.>>>.>>>..>>
>>>..<<<<.....>>>><<<<<<...........>>>>>>.........
>>>>..>>>>>>.......<<<<...<<<<<<...<<.......>>...>
>>>>>....>>>.>.......<<<<<.<<<<<<..<<<<<<<<<......
>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>.
...<<<<<<<....>>>.>>>>....>>..>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6c4h Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		F118 F127 R128 T129 Q130 D131 A132 T133 H134 G135 N136 S137 L138 S139 R141 P143 G144 S145 I146 G147 Q148 N149 Q150 T151 P152 G153 K154 V155 F156 K157 G158 K159 M161 A162
Binding residue
(residue number reindexed from 1)		F1 F10 R11 T12 Q13 D14 A15 T16 H17 G18 N19 S20 L21 S22 R24 P26 G27 S28 I29 G30 Q31 N32 Q33 T34 P35 G36 K37 V38 F39 K40 G41 K42 M44 A45
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6c4h, PDBe:6c4h, PDBj:6c4h
PDBsum6c4h
PubMed29403017
UniProtP60438|RL3_ECOLI Large ribosomal subunit protein uL3 (Gene Name=rplC)

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