Structure of PDB 6bmf Chain D Binding Site BS01

Receptor Information

>6bmf Chain D (length=285) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG
NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE
KLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN
GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN
VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAPDLT
IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN

Ligand information

>6bmf Chain G (length=8) Species: 4932 (Saccharomyces cerevisiae) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

DEIVNKVL

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6bmf The AAA ATPase Vps4 binds ESCRT-III substrates through a repeating array of dipeptide-binding pockets.
Resolution	3.2 Å
Binding residue (original residue number in PDB)	K205 W206 M207
Binding residue (residue number reindexed from 1)	K94 W95 M96

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0016887	ATP hydrolysis activity

View graph for
Molecular Function

External links

PDB	RCSB:6bmf, PDBe:6bmf, PDBj:6bmf
PDBsum	6bmf
PubMed	29165244
UniProt	P52917\|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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