Structure of PDB 6b0x Chain D Binding Site BS01

Receptor Information
>6b0x Chain D (length=284) Species: 53369 (Dubowvirus dv80alpha) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF
WADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQ
FFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFT
QDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDS
LDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKN
EDGTPVNLFEQDMVALRATMHVALHIADDKAFAK
Ligand information
>6b0x Chain d (length=16) Species: 53369 (Dubowvirus dv80alpha) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
PQNLAEIARQKRIIKN
Receptor-Ligand Complex Structure
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PDB6b0x Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		L48 Q49 M52 E53 Q59 G61 P230 I253 Y254
Binding residue
(residue number reindexed from 1)		L23 Q24 M27 E28 Q34 G36 P205 I228 Y229
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6b0x, PDBe:6b0x, PDBj:6b0x
PDBsum6b0x
PubMed28984245
UniProtA4ZFB3|CAPSD_BP80A Major capsid protein (Gene Name=gp47)

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