Structure of PDB 5zjg Chain D Binding Site BS01

Receptor Information
>5zjg Chain D (length=194) Species: 46680 (Pseudomonas nitroreducens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTHFSIVDKDGNAVSNTYTLNWDFGSGVVVKGAGFLLNDEMDDFSSKPGV
ANAFGVVGSDANAIEPGKRMLSSMSPSIVTRDGHVSLVLGTPGGSRIFTS
IFQVLNNVYDFHLPLEKAVAAQRVHHQLLPKDTIYYDAYAPLTGKVADEL
KAMGYTLEDQGWNMGDIQAIRVNGKALETASDPRGRGVGMVVKP
Ligand information
Ligand IDGLY
InChIInChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)
InChIKeyDHMQDGOQFOQNFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(=O)O)N
CACTVS 3.341NCC(O)=O
ACDLabs 10.04O=C(O)CN
FormulaC2 H5 N O2
NameGLYCINE
ChEMBLCHEMBL773
DrugBankDB00145
ZINCZINC000004658552
PDB chain5zjg Chain D Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5zjg Crystal structure analysis and enzymatic characterization of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Resolution1.702 Å
Binding residue
(original residue number in PDB)		N384 D406 S435 S436
Binding residue
(residue number reindexed from 1)		N21 D43 S72 S73
Annotation score1
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 20:36:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5zjg', asym_id = 'D', bs = 'BS01', title = 'Crystal structure analysis and enzymatic charact...myltranspeptidase from Pseudomonas nitroreducens.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5zjg', asym_id='D', bs='BS01', title='Crystal structure analysis and enzymatic charact...myltranspeptidase from Pseudomonas nitroreducens.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0006751,0036374', uniprot = '', pdbid = '5zjg', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006751,0036374', uniprot='', pdbid='5zjg', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>