Structure of PDB 5yxy Chain D Binding Site BS01

Receptor Information
>5yxy Chain D (length=124) Species: 69014 (Thermococcus kodakarensis KOD1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HEWALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQL
FAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEVKDKFIPEVVHAFLACP
KCGSHDFEVVKGRGVYVAGIKIEK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5yxy Chain D Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5yxy Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Resolution3.299 Å
Binding residue
(original residue number in PDB)		C73 C76 C110 C113
Binding residue
(residue number reindexed from 1)		C72 C75 C99 C102
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0016151 nickel cation binding
GO:0046872 metal ion binding
Biological Process
GO:0036211 protein modification process
GO:0051604 protein maturation

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Molecular Function
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Biological Process
External links
PDB RCSB:5yxy, PDBe:5yxy, PDBj:5yxy
PDBsum5yxy
PubMed29915046
UniProtQ5JIH3|HYPA_THEKO Hydrogenase maturation factor HypA (Gene Name=hypA)

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