Structure of PDB 5yx2 Chain D Binding Site BS01

Receptor Information
>5yx2 Chain D (length=285) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH
QGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGT
GRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNP
VMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKF
SKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFGFPVHYTDV
SNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yx2 Structural basis for DNMT3A-mediated de novo DNA methylation.
Resolution2.653 Å
Binding residue
(original residue number in PDB)		S708 C710 N711 S714 V716 P718 E756 V758 R792 R831 T832 T834 T835 R836 G890 R891
Binding residue
(residue number reindexed from 1)		S81 C83 N84 S87 V89 P91 E129 V131 R165 R204 T205 T207 T208 R209 G263 R264
Enzymatic activity
Enzyme Commision number 2.1.1.-
2.1.1.37: DNA (cytosine-5-)-methyltransferase.
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:5yx2, PDBe:5yx2, PDBj:5yx2
PDBsum5yx2
PubMed29414941
UniProtQ9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A (Gene Name=DNMT3A)

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