Structure of PDB 5ybb Chain D Binding Site BS01

Receptor Information
>5ybb Chain D (length=390) Species: 273068 (Caldanaerobacter subterraneus subsp. tengcongensis MB4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVS
PKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGF
CVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTL
IPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFP
HPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGD
LHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRP
RDSLERFWLLYYLHYLEPELSKMTFNAITKKDLQNVFIPLPPLEEQRRIV
AYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ybb Structural basis underlying complex assembly and conformational transition of the type I R-M system.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		D41 I42 S43 R66 R82 Y84 L85
Binding residue
(residue number reindexed from 1)		D37 I38 S39 R62 R78 Y80 L81
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004519 endonuclease activity
Biological Process
GO:0009307 DNA restriction-modification system

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Molecular Function
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Biological Process
External links
PDB RCSB:5ybb, PDBe:5ybb, PDBj:5ybb
PDBsum5ybb
PubMed28973912
UniProtQ8R9Q6

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