Structure of PDB 5yb3 Chain D Binding Site BS01

Receptor Information
>5yb3 Chain D (length=36) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
Ligand information
>5yb3 Chain G (length=23) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ELTWEEWEKKIEEYTKKIEEILK
Receptor-Ligand Complex Structure
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PDB5yb3 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Resolution2.043 Å
Binding residue
(original residue number in PDB)
Q52 Q56 I62 Q66
Binding residue
(residue number reindexed from 1)
Q18 Q22 I28 Q32
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yb3, PDBe:5yb3, PDBj:5yb3
PDBsum5yb3
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

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