Structure of PDB 5yb2 Chain D Binding Site BS01

Receptor Information
>5yb2 Chain D (length=36) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
Ligand information
>5yb2 Chain G (length=23) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ELTWEEWEKKIEEYTKKIEEILK
Receptor-Ligand Complex Structure
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PDB5yb2 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Resolution3.8 Å
Binding residue
(original residue number in PDB)
Q18 Q22 V25 I28 K29 Q32
Binding residue
(residue number reindexed from 1)
Q18 Q22 V25 I28 K29 Q32
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yb2, PDBe:5yb2, PDBj:5yb2
PDBsum5yb2
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

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