Structure of PDB 5xs8 Chain D Binding Site BS01

Receptor Information
>5xs8 Chain D (length=474) Species: 519441 (Streptobacillus moniliformis DSM 12112) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PKETTIFAMHLGKALDPNLPVFVKAEKDTNIKLVNVASQNQTDQIQAYNL
MLTEGKLPDIVSYELSADLENLGIEGGLIPLEDLINQHAPNLKKFFEENP
RYKKDAVAVDGHIYMIPNYYDYFNIKVSQGYFIRQDWLEKLGLKEPRTVD
ELYTTLKAFREKDPNGNGKKDEVPFFVRANNVRKVLTSLVDLFKASPIWY
EENGMVKYGPAQKEFKHAIKELSKWYKEGLIDEEIFTRGLESRDYLLSNN
LGGATDDWIASTSSYNRNLADKIPGFNLKLVLPYELNGNAKTRHARTTYL
GGWGISKDAKDPVSLIKYFDYWYSVEGRRLWNFGIEGSEYTLVDGKPVFT
DKVLKNPDGKTPLAVLREVGAQYRLGAFQDAQYELGWASESAKAGYKYYM
DNDVVLDELPILKYTKEKSKEFVSIDTAMRAVVEEKAQQWILGSGDIDKE
WDAYIKRLENLGLSKAEQIQNEAF
Ligand information
Ligand ID8EX
InChIInChI=1S/C8H15NO12S2/c1-3(10)9-5-6(11)7(21-23(16,17)18)4(20-8(5)12)2-19-22(13,14)15/h4-8,11-12H,2H2,1H3,(H,9,10)(H,13,14,15)(H,16,17,18)/t4-,5-,6-,7+,8-/m1/s1
InChIKeyKWDXXNWKTRGMDM-UIAUGNHASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6CC(=O)NC1C(C(C(OC1O)COS(=O)(=O)O)OS(=O)(=O)O)O
CACTVS 3.385CC(=O)N[C@H]1[C@H](O)O[C@H](CO[S](O)(=O)=O)[C@H](O[S](O)(=O)=O)[C@@H]1O
OpenEye OEToolkits 2.0.6CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O)COS(=O)(=O)O)OS(=O)(=O)O)O
CACTVS 3.385CC(=O)N[CH]1[CH](O)O[CH](CO[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O
FormulaC8 H15 N O12 S2
Name2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose;
[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate;
N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose;
2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose;
2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose;
2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose
ChEMBL
DrugBank
ZINCZINC000012494419
PDB chain5xs8 Chain H Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5xs8 Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Resolution1.952 Å
Binding residue
(original residue number in PDB)
H36 L37 Y146 R204 K210 W284 L326 R393
Binding residue
(residue number reindexed from 1)
H10 L11 Y120 R178 K184 W258 L300 R367
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5xs8, PDBe:5xs8, PDBj:5xs8
PDBsum5xs8
PubMed29208901
UniProtD1AWE0

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