Structure of PDB 5vl2 Chain D Binding Site BS01

Receptor Information
>5vl2 Chain D (length=126) Species: 9844 (Lama glama) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MAQVQLQQSGGGLVQAGGSLRLSCAASGRTHTPYAMGWFRQAPGKEREFV
GGIGGVAATTTYADSVRGRFTISRDDAKATVYLQMNSLKPEDTAVYYCAT
RASMAVSTSPRVYPIWGQGTQVTVSS
Ligand information
Ligand ID9EG
InChIInChI=1S/C13H9Cl3N2O/c14-8-1-3-9(4-2-8)17-13(19)18-10-5-6-11(15)12(16)7-10/h1-7H,(H2,17,18,19)
InChIKeyICUTUKXCWQYESQ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1cc(ccc1NC(=O)Nc2ccc(c(c2)Cl)Cl)Cl
CACTVS 3.385Clc1ccc(NC(=O)Nc2ccc(Cl)c(Cl)c2)cc1
ACDLabs 12.01c2c(NC(Nc1ccc(Cl)cc1)=O)ccc(c2Cl)Cl
FormulaC13 H9 Cl3 N2 O
NameN-(4-chlorophenyl)-N'-(3,4-dichlorophenyl)urea
ChEMBLCHEMBL1076347
DrugBankDB11155
ZINCZINC000000121480
PDB chain5vl2 Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vl2 Structure and specificity of several triclocarban-binding single domain camelid antibody fragments.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		Q3 V4 A26 R29 T30 H31 T32 Y34 M36 A79 T80 V81 T100 R101 A102
Binding residue
(residue number reindexed from 1)		Q3 V4 A26 R29 T30 H31 T32 Y34 M36 A79 T80 V81 T100 R101 A102
Annotation score1
Binding affinityMOAD: Kd=3.77nM
External links