Structure of PDB 5u5d Chain D Binding Site BS01

Receptor Information
>5u5d Chain D (length=180) Species: 317 (Pseudomonas syringae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LAVGKAHLEALLATRKMTLERHDATQVYFDGLEHLQNVAQYLAIPLSEFF
VGQTQSDLDDGVKIARRNGGFKREEIRGGVHYYTYEHLVTTNQDPGLMAL
RLDLHSDDEQPLRLNGGHGSREIVYVTRGAVRVRWVGDNDELKEDVLNEG
DSIFILPNVPHSFTNHVGGAKSEIIAINYG
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5u5d Chain D Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5u5d Characterization of Two Late-Stage Enzymes Involved in Fosfomycin Biosynthesis in Pseudomonads.
Resolution2.49 Å
Binding residue
(original residue number in PDB)
H128 E132 H171
Binding residue
(residue number reindexed from 1)
H118 E122 H161
Annotation score1
Enzymatic activity
Enzyme Commision number 1.11.1.23: (S)-2-hydroxypropylphosphonic acid epoxidase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0017000 antibiotic biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5u5d, PDBe:5u5d, PDBj:5u5d
PDBsum5u5d
PubMed27977135
UniProtQ9JN69|HPPE_PSESX (S)-2-hydroxypropylphosphonic acid epoxidase (Gene Name=hppE)

[Back to BioLiP]