Structure of PDB 5tzs Chain D Binding Site BS01

Receptor Information
>5tzs Chain D (length=146) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STELTVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEG
SYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYE
KRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG
Ligand information
>5tzs Chain 1 (length=515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caugcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuc
auuaaaucaguuaucguuuauuugauaguuccaugguauaacugugguaa
uucuagagcuaauacaugcuuguauuuauuaggaugauucauaauaacuu
uucgaaucgcauggccuugugcuggcgaugguucauucaaauuucugccc
uaucaacuuucgaugguaggauaguggccuaccaugguuucaacggguaa
cggggauuccggagagggagccugagaaacggcuaccacauccaaggaag
gcagcaggcgcguuacccaauccuaauucagggagguagugaaacgauac
agggccggucuuaauuggaaugaguacaauguaaauaccuuaacgagaag
ggcaccaccaggaguggagccugcggcgcgcgcuacacugacggagccag
cggaaacuccgucgugacgaggaauuccuaguaagcgcaagugcguugau
uacgucccugcccuu
..<<<..<<....<<....<<..........>>...>>.>>......<<.
.......<<<..<<..<<....<<<..........<.....<<.<<....
...>>.>>......>......<...<<<<<<.<......>.>>>>>>...
..>...<<<<..<<<.....>>>.>>>>....>>>...>>>>..>>>.<<
<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>...
<<<.....>>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>
...>>>........<<<....<<<.....>>>..>>>.......<<<<<.
.<<<<<>>>>>>>.>>>......<<..<...........>..>>...<<<
<<<<..<<..<<<<<..<<<.<<<...>>>.>>>.....<<<<<<<....
......>>>>>>>..........>>>>>.....<<<<<<..>>>>>>...
...>>...>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5tzs Architecture of the yeast small subunit processome.
Resolution5.1 Å
Binding residue
(original residue number in PDB)		P17 H18 F20 K36 N37 A38 G39 L40 S65 I66 R67 K102 R129 I131 S132 K133 T134
Binding residue
(residue number reindexed from 1)		P16 H17 F19 K35 N36 A37 G38 L39 S64 I65 R66 K101 R128 I130 S131 K132 T133
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0030686 90S preribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5tzs, PDBe:5tzs, PDBj:5tzs
PDBsum5tzs
PubMed27980088
UniProtP0CX47|RS11A_YEAST Small ribosomal subunit protein uS17A (Gene Name=RPS11A)

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