Structure of PDB 5tnh Chain D Binding Site BS01

Receptor Information
>5tnh Chain D (length=293) Species: 208963 (Pseudomonas aeruginosa UCBPP-PA14) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEEFPVPNGFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLM
PELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDRPFD
LVAHDIGIWNTYPMVVKNQADIARLVYMQAPIPDARIYRFPAFTAQGESL
VWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYAR
SYAKPHSLNASFEYYRALNESVRQNAELAKTRLQMPTMTLAGGGHGGMGT
FQLEQMKAYAEDVEGHVLPGCGHWLPEECAAPMNRLVIDFLSR
Ligand information
Ligand ID7MS
InChIInChI=1S/C20H32O4/c1-2-18(21)19(22)16-14-12-10-8-6-4-3-5-7-9-11-13-15-17-20(23)24/h3,5-6,8-9,11-12,14,18-19,21-22H,2,4,7,10,13,15-17H2,1H3,(H,23,24)/b5-3-,8-6-,11-9-,14-12-/t18-,19-/m1/s1
InChIKeyXYDVGNAQQFWZEF-VXNZHGHESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6CC[C@H]([C@@H](C/C=C\C/C=C\CC=CC/C=C\CCCC(=O)O)O)O
CACTVS 3.385CC[C@@H](O)[C@H](O)C\C=C/C\C=C/C\C=C/C\C=C/CCCC(O)=O
CACTVS 3.385CC[CH](O)[CH](O)CC=CCC=CCC=CCC=CCCCC(O)=O
ACDLabs 12.01CCC(O)C(O)C[C@H]=CC[C@H]=[C@H]C[C@H]=[C@H]C/C=C\CCCC(O)=O
OpenEye OEToolkits 2.0.6CCC(C(CC=CCC=CCC=CCC=CCCCC(=O)O)O)O
FormulaC20 H32 O4
Name(5Z,8Z,11Z,14Z,17R,18R)-17,18-dihydroxyicosa-5,8,11,14-tetraenoic acid
ChEMBL
DrugBank
ZINCZINC000027645264
PDB chain5tnh Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5tnh Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		D129 A154 P165 S173 L174 H177 F178 F203 Y239 G270 M272 H297
Binding residue
(residue number reindexed from 1)		D105 A130 P141 S149 L150 H153 F154 F179 Y215 G246 M248 H273
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) F63 T66 D129 I130 H177 Y239 H269 H297
Catalytic site (residue number reindexed from 1) F39 T42 D105 I106 H153 Y215 H245 H273
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity

View graph for
Molecular Function
External links
PDB RCSB:5tnh, PDBe:5tnh, PDBj:5tnh
PDBsum5tnh
PubMed28392259
UniProtA0A0H2ZD27

[Back to BioLiP]