Structure of PDB 5tc1 Chain D Binding Site BS01

Receptor Information
>5tc1 Chain D (length=129) Species: 329852 (Emesvirus zinderi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQ
SSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSD
CELIVKAMQGLLKDGNPIPSAIAANSGIY
Ligand information
>5tc1 Chain R (length=242) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaauuccauuccccguucgcguuuacgcggacggcgcaaaccauugcgc
gcgacguaucgugcacuagguauaguguuacaaaguaaucuacuaauaga
augaggauuacccaugaagaaguucaacucuugacaaauccuuguccugc
cuguaaggagugaucaaucgaucagacgauauuauauguccgguuuuaaa
ccgauucccucaggaguguaacuagcugcuuggcuaguuacc
<<<<<...>>>>><<<<<<<<<....>>>>>>>>><<<<<....>>>>>.
<<<<....>>>>.<<<<......>>>><<<<...>>>><<<<....>>>>
<<<.<<....>>>>>.<<<.<<<...>>>>>>.<<<<....>>>>..<.<
<<...>>>>.<<<<<....>>>>><<<.<<<...>>>>>><<<<<...>>
>>><<<<<....>>>>><<.<<<.....<...>..>>.>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5tc1 In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		Q6 A21 P22 F25 N27 G28 N36 S37
Binding residue
(residue number reindexed from 1)		Q6 A21 P22 F25 N27 G28 N36 S37
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
GO:0042802 identical protein binding
Biological Process
GO:0006417 regulation of translation
GO:1904972 negative regulation of viral translation
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5tc1, PDBe:5tc1, PDBj:5tc1
PDBsum5tc1
PubMed27992877
UniProtP03612|CAPSD_BPMS2 Capsid protein

[Back to BioLiP]