Structure of PDB 5svc Chain D Binding Site BS01

Receptor Information
>5svc Chain D (length=763) Species: 78245 (Xanthobacter autotrophicus Py2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TRGIVRGGETLKEHRDRLMAATKATGRYAGLKTLELREREPILYNKLFSR
LRAGVVDARETAKKIAASPIVEQEGELCFTLYNAAGDSLLTSTGIIIHVG
TMGAAIKYMIENNWEANPGVHDKDIFCNNDSLIGNVHPCDIHTIVPIFWE
GELIGWVGGVTHVIDTGAVGPGSMATGQVQRFGDGYSITCRKVGANDTLF
RDWLHESQRMVRTTRYWMLDERTRIAGCHMIRKLVEEVVAEEGIEAYWKF
AYEAVEHGRLGLQARIKAMTIPGTYRQVGFVDVPYAHEDVRVPSDFAKLD
TIMHAPCEMTIRRDGTWRLDFEGSSRWGWHTYNAHQVSFTSGIWVMMTQT
LIPSEMINDGAAYGTEFRLPKGTWMNPDDRRVAFSYSWHFLVSAWTALWR
GLSRSYFGRGYLEEVNAGNANTSNWLQGGGFNQYDEIHAVNSFECAANGT
GATAVQDGLSHAAAIWNPEGDMGDMEIWELAEPLVYLGRQIKASSGGSGK
YRGGCGFESLRMVWNAKDWTMFFMGNGHISSDWGLMGGYPAASGYRFAAH
KTNLKELIASGAEIPLGGDTDPENPTWDAMLPDAQIKRDKQAITTEEMFS
DYDLYLNYMRGGPGFGDPLDREPQAVADDINGGYVLERFAGEVYGVVVRK
GADGQYGVDEAGTAAARAQIRKDRLAKSVPVSEWMKGEREKILAKDAGTQ
VRQMFAASFKLGPRFEKDFRTFWSLPDSWTLPEEEIGVPTYGSRYSMDIS
ELPDVHTVQFVEE
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5svc Chain D Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5svc Structural Basis for the Mechanism of ATP-Dependent Acetone Carboxylation.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		H150 D153 H175
Binding residue
(residue number reindexed from 1)		H137 D140 H162
Annotation score1
Enzymatic activity
Enzyme Commision number 6.4.1.6: acetone carboxylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016874 ligase activity
GO:0017168 5-oxoprolinase (ATP-hydrolyzing) activity
GO:0018710 acetone carboxylase activity
Biological Process
GO:0006749 glutathione metabolic process
GO:0140977 cellular detoxification of acetone
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5svc, PDBe:5svc, PDBj:5svc
PDBsum5svc
PubMed28775283
UniProtQ8RM03|ACXB_XANP2 Acetone carboxylase alpha subunit (Gene Name=acxB)

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