Structure of PDB 5mkm Chain D Binding Site BS01

Receptor Information
>5mkm Chain D (length=277) Species: 35619 (Streptomyces griseoflavus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAAPAGGEVRRVTMYAERLAGGQMGYGLEKGKASIPGPLIELNEGDTLHV
EFENTMDVPVSLHVHGLDYEISSDGTKQNKSHVEPGGTRTYTWRTHEPGR
RADGTWRAGSAGYWHYHDHVVGTEFGTGGIRNGLYGPVIVRRKGDVLPDA
THTIVFNDMTINNRPAHTGPNFEATVGDRVEIVMITHGEYYHTFHMHGHR
WADNRTGMLTGPDDPSQVIDNKICGPADSFGFQIIAGEGVGAGAWMYHCH
VQSHSDMGMVGLFLVKKPDGTIPGYDP
Ligand information
Ligand IDO
InChIInChI=1S/H2O/h1H2
InChIKeyXLYOFNOQVPJJNP-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		O
CACTVS 3.341[O]
FormulaO
NameOXYGEN ATOM
ChEMBLCHEMBL1098659
DrugBankDB09145
ZINC
PDB chain5mkm Chain D Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5mkm Investigations of Accessibility of T2/T3 Copper Center of Two-Domain Laccase fromStreptomyces griseoflavusAc-993.
Resolution1.996 Å
Binding residue
(original residue number in PDB)		H288 H290
Binding residue
(residue number reindexed from 1)		H248 H250
Annotation score1
Enzymatic activity
Enzyme Commision number 1.10.3.2: laccase.
Gene Ontology
Molecular Function
GO:0005507 copper ion binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0052716 hydroquinone:oxygen oxidoreductase activity

View graph for
Molecular Function
External links
PDB RCSB:5mkm, PDBe:5mkm, PDBj:5mkm
PDBsum5mkm
PubMed31261802
UniProtA0A0M4FJ81

[Back to BioLiP]