Structure of PDB 5mgy Chain D Binding Site BS01

Receptor Information
>5mgy Chain D (length=309) Species: 32042 (Stutzerimonas stutzeri ATCC 14405 = CCUG 16156) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDLFQDKVEAFTGPTMGSTYTVKYVRSGDGPAKEVLHGEVEAILGQLDKQ
LSTYRSDSDVERFNALPAGSCEPMPDMVRELVAAGSQLSADSDGAFDLTL
EPLLNLWGFGPQGERVPSAEDISAARALTGQQHLSIDGDRLCKAVALQLD
FNSIAAGYAVDLVIDRLKALGVQSYLVEITGELKAEGRKPDGSPWRIAIE
APRVAQKIVELDGMGVSTSGDYRNYFRYSHTLDPQSGQPIEHHLAAVTVI
DKSTLRADGLSTALMVLGPEKGLALAERNGIAAFFVVREGQGFVTTSTKA
FDELFGAGV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5mgy Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5mgy The flavinyl transferase ApbE of Pseudomonas stutzeri matures the NosR protein required for nitrous oxide reduction.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		D297 T301
Binding residue
(residue number reindexed from 1)		D258 T262
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.1.180: FAD:protein FMN transferase.
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0017013 protein flavinylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5mgy, PDBe:5mgy, PDBj:5mgy
PDBsum5mgy
PubMed27864152
UniProtA0A2N8RKH1

[Back to BioLiP]