Structure of PDB 5lba Chain D Binding Site BS01

Receptor Information

>5lba Chain D (length=437) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSL
CYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERK
ELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAH
CVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK
KPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGLSGCGIVYC
RTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVAT
ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN
DRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELGCRHAAI
AKYFGDALPACAKGCDHCQNPTAVRRRLEALERSSSW

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5lba Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5lba Crystal structure of human RECQL5 helicase in complex with 3D fragment (1-cyclohexyl-3-(oxolan-2-ylmethyl)urea)
Resolution	2.5 Å
Binding residue (original residue number in PDB)	C411 C427 C431 C434
Binding residue (residue number reindexed from 1)	C395 C411 C415 C418
Annotation score	1

Enzymatic activity

Enzyme Commision number

5.6.2.4: DNA 3'-5' helicase.

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0004386	helicase activity
GO:0005524	ATP binding

	Biological Process
GO:0006310	DNA recombination

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:5lba, PDBe:5lba, PDBj:5lba
PDBsum	5lba
PubMed
UniProt	O94762\|RECQ5_HUMAN ATP-dependent DNA helicase Q5 (Gene Name=RECQL5)

[Back to BioLiP]