Structure of PDB 5k45 Chain D Binding Site BS01

Receptor Information
>5k45 Chain D (length=328) Species: 273121 (Wolinella succinogenes DSM 1740) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPQVTILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKG
EQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFF
LNLTVKSQKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVI
VMNDEIHAAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHT
LASEFDISKIEELPRVDILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGN
PFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLN
PQKARVLLMLALTKTSDREAIQKIFSTY
Ligand information
Ligand IDGLU
InChIInChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1
InChIKeyWHUUTDBJXJRKMK-VKHMYHEASA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)C(N)CCC(=O)O
OpenEye OEToolkits 1.7.0C(CC(=O)O)C(C(=O)O)N
OpenEye OEToolkits 1.7.0C(CC(=O)O)[C@@H](C(=O)O)N
CACTVS 3.370N[C@@H](CCC(O)=O)C(O)=O
CACTVS 3.370N[CH](CCC(O)=O)C(O)=O
FormulaC5 H9 N O4
NameGLUTAMIC ACID
ChEMBLCHEMBL575060
DrugBankDB00142
ZINCZINC000001482113
PDB chain5k45 Chain D Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5k45 The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity.
Resolution1.63 Å
Binding residue
(original residue number in PDB)		G59 S60 Q61 G92 T93 D94 A118
Binding residue
(residue number reindexed from 1)		G57 S58 Q59 G90 T91 D92 A116
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) T14 Y27 T93 D94 K166 E287
Catalytic site (residue number reindexed from 1) T12 Y25 T91 D92 K164 E285
Enzyme Commision number 3.5.1.1: asparaginase.
Gene Ontology
Molecular Function
GO:0004067 asparaginase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006528 asparagine metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5k45, PDBe:5k45, PDBj:5k45
PDBsum5k45
PubMed28139703
UniProtP50286|ASPG_WOLSU L-asparaginase (Gene Name=ansA)

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