Structure of PDB 5ixg Chain D Binding Site BS01

Receptor Information
>5ixg Chain D (length=169) Species: 350702 (Burkholderia cenocepacia PC184) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SATYQFDPSHTYPSFEADHFGGLSVWRGKFDKSSGTVTLDRAAKTGTVDV
TTDIASIHTGSAKLDEHLQTAEFFDAAKFPQANYKGTIKFDGDKPVSVVG
NLTLHGVTKPLTLKIDSFKCMPHPMLKREVCGVDAVGEFSRDDFGLDYGK
QYGFKMKTKLLITAEAVKQ
Ligand information
Ligand IDOTP
InChIInChI=1S/C40H68O7P2/c1-33(2)17-10-18-34(3)19-11-20-35(4)21-12-22-36(5)23-13-24-37(6)25-14-26-38(7)27-15-28-39(8)29-16-30-40(9)31-32-46-49(44,45)47-48(41,42)43/h17,19,21,23,25,27,29,31H,10-16,18,20,22,24,26,28,30,32H2,1-9H3,(H,44,45)(H2,41,42,43)/b34-19+,35-21+,36-23+,37-25+,38-27+,39-29+,40-31+
InChIKeyIKKLDISSULFFQO-DJMILUHSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(=O)(O)OP(=O)(O)O)C)C)C)C)C)C)C)C
CACTVS 3.341CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCO[P](O)(=O)O[P](O)(O)=O
OpenEye OEToolkits 1.5.0CC(=CCC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CC/C(=C/CO[P@](=O)(O)OP(=O)(O)O)/C)/C)/C)/C)/C)/C)/C)C
CACTVS 3.341CC(C)=CCCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CCC(/C)=C/CO[P@@](O)(=O)O[P](O)(O)=O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OC/C=C(/CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)C)C
FormulaC40 H68 O7 P2
Name(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE;
OCTAPRENYL PYROPHOSPHATE
ChEMBL
DrugBank
ZINCZINC000008219112
PDB chain5ixg Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ixg Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
F20 A22 H24 W31 F35 V55 T57 L73 F78 V138 Y153 I167
Binding residue
(residue number reindexed from 1)
F15 A17 H19 W26 F30 V50 T52 L68 F73 V133 Y148 I162
Annotation score1
External links