Structure of PDB 5f99 Chain D Binding Site BS01

Receptor Information
>5f99 Chain D (length=100) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAG
EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Ligand information
>5f99 Chain I (length=147) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atctgcaacagtcctaacattcacctcttgtgtgtttgtgtctgttcgcc
atcccgtctccgctcgtcacttatccttcactttccagagggtccccccg
cagaccccggcgaccctcaggtcggccgactgcggcacagttttgat
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5f99 X-ray structure of the MMTV-A nucleosome core.
Resolution2.63 Å
Binding residue
(original residue number in PDB)		R30 T32 S55 S56 R86 S87 T88
Binding residue
(residue number reindexed from 1)		R5 T7 S30 S31 R61 S62 T63
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5f99, PDBe:5f99, PDBj:5f99
PDBsum5f99
PubMed26787910
UniProtP02281|H2B11_XENLA Histone H2B 1.1

[Back to BioLiP]