Structure of PDB 5f88 Chain D Binding Site BS01

Receptor Information

>5f88 Chain D (length=214) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGV
IWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALT
YYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH
KPSNTKVDKRVEPK

Ligand information

>5f88 Chain F (length=12) Species: 32630 (synthetic construct) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

CQFDYSTRRLKC

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5f88 Natural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope-Fab complexes.
Resolution	2.481 Å
Binding residue (original residue number in PDB)	Q39 S40 P41 T90 Q111 L114 E154 P173
Binding residue (residue number reindexed from 1)	Q39 S40 P41 T90 Q111 L114 E148 P167

External links

PDB	RCSB:5f88, PDBe:5f88, PDBj:5f88
PDBsum	5f88
PubMed	27834791

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