Structure of PDB 5f3w Chain D Binding Site BS01

Receptor Information

>5f3w Chain D (length=358) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALF
GAGSNFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKN
GKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLE
TVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKF
VEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTK
DFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDE
PTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGN
VSKVKING

Ligand information

>5f3w Chain E (length=25) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aaagttgggattgagacacacattc

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5f3w ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex
Resolution	3.11 Å
Binding residue (original residue number in PDB)	A52 N57 Y58 I108 S109 K144
Binding residue (residue number reindexed from 1)	A52 N57 Y58 I108 S109 K144

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0006302	double-strand break repair

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Molecular Function

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Biological Process

External links

PDB	RCSB:5f3w, PDBe:5f3w, PDBj:5f3w
PDBsum	5f3w
PubMed	26717941
UniProt	Q58718\|RAD50_METJA DNA double-strand break repair Rad50 ATPase (Gene Name=rad50)

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