Structure of PDB 5d6s Chain D Binding Site BS01

Receptor Information
>5d6s Chain D (length=370) Species: 1308 (Streptococcus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIKLEIQKMAKEIGISKIGFTTADDFDYLEKSLRLGVEEGRTTGFEHKN
IEERIYPKLSLESAKTIISIAVAYPHKLPQQPQKTEFKRGKITPNSWGLD
YHYVLQDKLKRLAKGIEKLTENFEYKGMVDTGALVDTAVAKRAGIGFIGK
NGLVISKEYGSYMYLGELITNLEIEPDQEVDYGCGDCRRCLDACPTSCLI
GDGTMNARRCLSFQTQDKGMMDMEFRKKIKTVIYGCDICQISCPYNRGID
NPLDIDPDLAMPELLPFLELTNKSFKETFGMIAGSWRGKNILQRNAIIAL
ANLHDRNAIVKLMEIIDKNNNPIHTATAIWALGEIVKKPDEGMLDYMRGL
SPKDEHSQAEWELVCAKWQI
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain5d6s Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5d6s Epoxyqueuosine Reductase Structure Suggests a Mechanism for Cobalamin-dependent tRNA Modification.
Resolution2.65 Å
Binding residue
(original residue number in PDB)		K150 C184 C187 C190 C243 P244 Y245
Binding residue
(residue number reindexed from 1)		K150 C184 C187 C190 C243 P244 Y245
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
GO:0052693 epoxyqueuosine reductase activity
Biological Process
GO:0008033 tRNA processing
GO:0008616 queuosine biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d6s, PDBe:5d6s, PDBj:5d6s
PDBsum5d6s
PubMed26378237
UniProtA0A0R4I997

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