Structure of PDB 5cdq Chain D Binding Site BS01

Receptor Information
>5cdq Chain D (length=190) Species: 158879 (Staphylococcus aureus subsp. aureus N315) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILN
VEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDG
AHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMN
PEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNA
Ligand information
Receptor-Ligand Complex Structure
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PDB5cdq Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin.
Resolution2.95 Å
Binding residue
(original residue number in PDB)		E435 G459 K460 D512
Binding residue
(residue number reindexed from 1)		E22 G46 K47 D99
Enzymatic activity
Enzyme Commision number 5.6.2.2: DNA topoisomerase (ATP-hydrolyzing).
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524 ATP binding
Biological Process
GO:0006265 DNA topological change

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Molecular Function
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Biological Process
External links
PDB RCSB:5cdq, PDBe:5cdq, PDBj:5cdq
PDBsum5cdq
PubMed26640131
UniProtP66937|GYRB_STAAN DNA gyrase subunit B (Gene Name=gyrB)

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