Structure of PDB 5bv5 Chain D Binding Site BS01

Receptor Information
>5bv5 Chain D (length=327) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDPPLHDELR
SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVI
SKILGLPIEDKEKFKEWSDLVAFIFELGKKYLELIGYVKDHLNSGTEVVS
RVVSNLSDIEKLGYIILLLIAGNEATTNLISNSVIDFTRFNLWQRIREEN
LYLKAIEEALRYSPPVMRTVRKTKERVKLDQTIEEGEYVRVWIASANRDE
EVFHDGEKFIPDRNPNPHLSFGSGIHLHLGAPLARLEARIAIEEFSKRFR
HIEILDTEKVPNEVLNGYKRLVVRLKS
Ligand information
Ligand IDHEM
InChIInChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKeyKABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
FormulaC34 H32 Fe N4 O4
NamePROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBankDB18267
ZINC
PDB chain5bv5 Chain D Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5bv5 Structural Adaptability Facilitates Histidine Heme Ligation in a Cytochrome P450.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		H76 G210 N211 A213 L217 P253 T257 R259 S309 F310 H317
Binding residue
(residue number reindexed from 1)		H46 G172 N173 A175 L179 P215 T219 R221 S270 F271 H278
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) A209 E212 A213 T214 H317 L318 G319 E326 L354
Catalytic site (residue number reindexed from 1) A171 E174 A175 T176 H278 L279 G280 E287 L315
Enzyme Commision number 1.11.1.7: peroxidase.
1.14.-.-
Gene Ontology
Molecular Function
GO:0004497 monooxygenase activity
GO:0004601 peroxidase activity
GO:0005506 iron ion binding
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 heme binding
GO:0046872 metal ion binding
GO:0140825 lactoperoxidase activity
Biological Process
GO:0098869 cellular oxidant detoxification
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5bv5, PDBe:5bv5, PDBj:5bv5
PDBsum5bv5
PubMed26299431
UniProtQ55080|CP119_SULAC Cytochrome P450 119 (Gene Name=cyp119)

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