Structure of PDB 5bke Chain D Binding Site BS01

Receptor Information
>5bke Chain D (length=271) Species: 224911 (Bradyrhizobium diazoefficiens USDA 110) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AIRQLQTHFVGQVSGLDLRKPLTPGEAREVESAMDKYAVLVFHDQDITDE
QQMAFALNFGQREDSGLNDVSNLGKDGKPLAKDSRTHLFNLGNCLWHSDS
SFRPIPAKFSLLSARVVNPTGGNTEFADMRAAYDALDDETKAEIEDLVCE
HSLMYSRGSLGFTEYTDEEKQMFKPVLQRLVRTHPVHRRKSLYLSSHAGK
IASMSVPEGRLLLRDLNEHATQPEFVYVHKWKLHDLVMWDNRQTMHRVRR
YDQSQPRDMRRATVAGTEPTV
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5bke Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5bke Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		H115 D117 H264
Binding residue
(residue number reindexed from 1)		H97 D99 H246
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) H115 D117 H264 R279
Catalytic site (residue number reindexed from 1) H97 D99 H246 R261
Enzyme Commision number 1.14.11.-
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity

View graph for
Molecular Function
External links
PDB RCSB:5bke, PDBe:5bke, PDBj:5bke
PDBsum5bke
PubMed31209034
UniProtQ89UC4

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