Structure of PDB 5a02 Chain D Binding Site BS01

Receptor Information
>5a02 Chain D (length=335) Species: 190650 (Caulobacter vibrioides CB15) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKLGYAILGLGYYATRIIMPRFAECEHSRLAALVSGTPEKLKTYGEQYGI
PETHRYSYETFDRIIDNPDVDIVYVITPNSLHRPFTERAARAGKHVMCEK
PMANTVADCEAMIAACKKAGRKLMIGYRSRFQAHNIEAIKLVRDGALGPV
RTVVTDHGFTIGDPKQWRLNRALAGGGSLMDIGIYSLNAARYLTGEEPVA
VNAVESTDRSDPRFGEVEDIINFQLLFPSGATANCVSAYSVNCNRYRVSG
PKGWVEIDPATSYQGQAMRAQLGGPPAPREPAPQPKNQFSAQLDHLSECI
LTGREPIVGGDDGLKDLRVIEAIYRAAREGRTVKL
Ligand information
Ligand IDNAP
InChIInChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKeyXJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
FormulaC21 H28 N7 O17 P3
NameNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBLCHEMBL295069
DrugBankDB03461
ZINC
PDB chain5a02 Chain D Residue 1340 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5a02 Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		L14 G15 Y16 Y17 S39 G40 T41 K44 Y62 I80 T81 P82 N83 L85 H86 E103 K104 R132 W171 R172 Y189 Y267
Binding residue
(residue number reindexed from 1)		L10 G11 Y12 Y13 S35 G36 T37 K40 Y58 I76 T77 P78 N79 L81 H82 E99 K100 R128 W167 R168 Y185 Y263
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) K104 Y189
Catalytic site (residue number reindexed from 1) K100 Y185
Enzyme Commision number 1.1.99.-
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5a02, PDBe:5a02, PDBj:5a02
PDBsum5a02
PubMed26438878
UniProtQ9A8X3

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