Structure of PDB 4zh1 Chain D Binding Site BS01

Receptor Information

>4zh1 Chain D (length=126) Species: 9606 (Homo sapiens)

FGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNG
QWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGY
RLSSRSHTLRTTCWDGKLEYPTCAKR

Ligand information

• Ligand ID: SIA
• InChI: InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,7+,8+,9+,11+/m0/s1
• InChIKey: SQVRNKJHWKZAKO-YRMXFSIDSA-N
• SMILES:
  CACTVS 3.341: CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
  OpenEye OEToolkits 1.5.0: CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O
  OpenEye OEToolkits 1.5.0: CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O
  ACDLabs 10.04: O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1
  CACTVS 3.341: CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
• Formula: C11 H19 N O9
• Name: N-acetyl-alpha-neuraminic acid;
  N-acetylneuraminic acid;
  sialic acid;
  alpha-sialic acid;
  O-SIALIC ACID
• ChEMBL: CHEMBL1234621
• DrugBank: DB03721
• ZINC: ZINC000004081651
• PDB chain: 4zh1 Chain G Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4zh1 Complement Factor H and Simian Virus 40 bind the GM1 ganglioside in distinct conformations.
• Resolution: 2.24 Å
• Binding residue (original residue number in PDB): W1183 K1188 S1191 E1195 S1196 V1197 E1198 R1215
• Binding residue (residue number reindexed from 1): W78 K83 S86 E90 S91 V92 E93 R110
• Annotation score: 4

External links

• PDB: RCSB:4zh1, PDBe:4zh1, PDBj:4zh1
• PDBsum: 4zh1
• PubMed: 26715202
• UniProt: P08603|CFAH_HUMAN Complement factor H (Gene Name=CFH)