Structure of PDB 4yit Chain D Binding Site BS01

Receptor Information
>4yit Chain D (length=277) Species: 127520 (Gremmeniella abietina) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
INPWFLTGFIDGEGCFRISVTKDWRVQLFFQINLHEKDRALLESIKDYLK
VGKIHISGKNLVQYRIQTFDELTILIKHLKEYPLVSKKRADFELFNTAHK
LIKNNEHLNKEGINKLVSLKASLNLGLSESLKLAFPNVISATRLNIPDPH
WLSGFASAEGCFMVGIAKSSASSTGYQVYLTFILTQHVRDENLMKCLVDY
FNWGRLARKRNVYEYQVSKFSDVEKLLSFFDKYPILGEKAKDLQDFCSVS
DLMKSKTHLTEEGVAKIRKIKEGMNRG
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4yit Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Resolution3.24 Å
Binding residue
(original residue number in PDB)
E13 R30 R70 Q72 T73 H112 L113 A168 E169 G170 C171 M173 T195 H197 K281 N285
Binding residue
(residue number reindexed from 1)
E13 R25 R65 Q67 T68 H107 L108 A158 E159 G160 C161 M163 T185 H187 K271 N275
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Cellular Component
GO:0005739 mitochondrion

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:4yit, PDBe:4yit, PDBj:4yit
PDBsum4yit
PubMed27133026
UniProtA0A158RFF2

[Back to BioLiP]