Structure of PDB 4j5s Chain D Binding Site BS01

Receptor Information
>4j5s Chain D (length=140) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQ
KKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGV
TDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
Ligand information
Ligand IDZZC
InChIInChI=1S/C15H23N5O13P2/c1-6(21)10(23)7(22)2-30-34(26,27)33-35(28,29)31-3-8-11(24)12(25)15(32-8)20-5-19-9-13(16)17-4-18-14(9)20/h4-5,7-8,10-12,15,22-25H,2-3H2,1H3,(H,26,27)(H,28,29)(H2,16,17,18)/p-2/t7-,8-,10+,11-,12-,15-/m1/s1
InChIKeyIZTPERUWNZCNNH-GHVQHMAVSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1CC(=O)C(C(COP(=O)([O-])OP(=O)([O-])OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O)O
CACTVS 3.352CC(=O)[C@H](O)[C@H](O)CO[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 1.6.1CC(=O)[C@@H]([C@@H](CO[P@](=O)([O-])O[P@@](=O)([O-])OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O)O
CACTVS 3.352CC(=O)[CH](O)[CH](O)CO[P]([O-])(=O)O[P]([O-])(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
FormulaC15 H21 N5 O13 P2
Name[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [[(2R,3R)-2,3-DIHYDROXY-4-OXO-PENTOXY]-OXIDO-PHOSPHORYL] PHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain4j5s Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4j5s Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
Resolution1.55 Å
Binding residue
(original residue number in PDB)
L24 C36 I37 G46 I47 K87 R122 G124 G126 L127 D128
Binding residue
(residue number reindexed from 1)
L9 C21 I22 G31 I32 K72 R107 G109 G111 L112 D113
Annotation score3
Enzymatic activity
Enzyme Commision number 3.2.2.-
3.5.1.-
Gene Ontology
Molecular Function
GO:0001883 purine nucleoside binding
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0061463 O-acetyl-ADP-ribose deacetylase activity
GO:0140293 ADP-ribosylglutamate hydrolase activity
Biological Process
GO:0006974 DNA damage response
GO:0042278 purine nucleoside metabolic process
GO:0051725 protein de-ADP-ribosylation
GO:0140291 peptidyl-glutamate ADP-deribosylation
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0090734 site of DNA damage

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4j5s, PDBe:4j5s, PDBj:4j5s
PDBsum4j5s
PubMed23481255
UniProtQ9Y530|OARD1_HUMAN ADP-ribose glycohydrolase OARD1 (Gene Name=OARD1)

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