Structure of PDB 4dr9 Chain D Binding Site BS01

Receptor Information
>4dr9 Chain D (length=184) Species: 269084 (Synechococcus elongatus PCC 6301) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VAIRVAKKKLAKPPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTM
YSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQ
CQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMD
HLNGVLFVDRVENRLELNEALDKKGFAVQAVRPV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain4dr9 Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4dr9 Structure and function of a cyanophage-encoded peptide deformylase.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		C109 H151 H155
Binding residue
(residue number reindexed from 1)		C105 H147 H151
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G61 Q66 C109 L110 H151 E152 H155
Catalytic site (residue number reindexed from 1) G57 Q62 C105 L106 H147 E148 H151
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:4dr9, PDBe:4dr9, PDBj:4dr9
PDBsum4dr9
PubMed23407310
UniProtA0A0H3JZJ4

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