Structure of PDB 3swn Chain D Binding Site BS01

Receptor Information
>3swn Chain D (length=73) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT
GVTEKHSEMLLNGNGMCMLIPGG
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3swn Chain D Residue 81 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3swn Structure of the LSm657 complex: an assembly intermediate of the LSm1-7 and LSm2-8 rings.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		E49 E58 H60
Binding residue
(residue number reindexed from 1)		E45 E54 H56
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008266 poly(U) RNA binding
GO:0030620 U2 snRNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006364 rRNA processing
GO:0006397 mRNA processing
GO:0008033 tRNA processing
GO:0008380 RNA splicing
GO:1905323 telomerase holoenzyme complex assembly
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005682 U5 snRNP
GO:0005686 U2 snRNP
GO:0005688 U6 snRNP
GO:0005697 telomerase holoenzyme complex
GO:0005730 nucleolus
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex
GO:0032991 protein-containing complex
GO:0046540 U4/U6 x U5 tri-snRNP complex
GO:0120115 Lsm2-8 complex
GO:1990726 Lsm1-7-Pat1 complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3swn, PDBe:3swn, PDBj:3swn
PDBsum3swn
PubMed22001694
UniProtO42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 (Gene Name=lsm5)

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