Structure of PDB 3iem Chain D Binding Site BS01

Receptor Information
>3iem Chain D (length=431) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPK
EVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKV
MDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVA
QGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRET
VREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLD
SPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKAL
NRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAE
IIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVH
GEEEKLLALGKLLALRGQEVSLARFGEGVPV
Ligand information
Receptor-Ligand Complex Structure
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PDB3iem Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
Resolution2.5 Å
Binding residue
(original residue number in PDB)		Q34 H61 L62 D96 A97 V100 M101 Y189 F223 A224 V225 R227 P252 M253 S313 M315 A317 Y341 S378 H380 H400
Binding residue
(residue number reindexed from 1)		Q34 H61 L62 D96 A97 V100 M101 Y189 F223 A224 V225 R227 P252 M253 S313 M315 A317 Y341 S378 H380 H400
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3iem, PDBe:3iem, PDBj:3iem
PDBsum3iem
PubMed
UniProtQ5SLP1|RNSE_THET8 Ribonuclease TTHA0252 (Gene Name=TTHA0252)

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